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A new synthesis for the refinement of heavy-atom parameters in protein crystallography

A new synthesis for the refinement of heavy-atom parameters in protein crystallography Both of the conventional 'double-difference' or 'residual' syntheses used in protein crystallography to detect errors in refined heavy-atom parameters are approximations to the desired vector difference synthesis between the observed and calculated heavy-atom structure factors. By using the measured anomalous differences between Friedel-related pairs of reflexions from the parent-plus-heavy-atom crystal, it is possible to calculate the coefficients for the vector difference synthesis. Tests indicate that this synthesis can provide a better signal-to-noise ratio than the conventional syntheses. In the Appendix it is shown that PH parent-plus-heavy-atom structure amplitude in the absence of anomalous scattering, is properly calculated as the mean of the structure amplitudes of the Friedel-related reflexions, not the root mean square. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Acta Crystallographica Section A: Crystal Physics, Diffraction, Theoretical and General Crystallography International Union of Crystallography

A new synthesis for the refinement of heavy-atom parameters in protein crystallography

A new synthesis for the refinement of heavy-atom parameters in protein crystallography


Abstract

Both of the conventional 'double-difference' or 'residual' syntheses used in protein crystallography to detect errors in refined heavy-atom parameters are approximations to the desired vector difference synthesis between the observed and calculated heavy-atom structure factors. By using the measured anomalous differences between Friedel-related pairs of reflexions from the parent-plus-heavy-atom crystal, it is possible to calculate the coefficients for the vector difference synthesis. Tests indicate that this synthesis can provide a better signal-to-noise ratio than the conventional syntheses. In the Appendix it is shown that PH parent-plus-heavy-atom structure amplitude in the absence of anomalous scattering, is properly calculated as the mean of the structure amplitudes of the Friedel-related reflexions, not the root mean square.

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Publisher
International Union of Crystallography
Copyright
Copyright (c) 1976 International Union of Crystallography
ISSN
0567-7394
DOI
10.1107/S0567739476001034
Publisher site
See Article on Publisher Site

Abstract

Both of the conventional 'double-difference' or 'residual' syntheses used in protein crystallography to detect errors in refined heavy-atom parameters are approximations to the desired vector difference synthesis between the observed and calculated heavy-atom structure factors. By using the measured anomalous differences between Friedel-related pairs of reflexions from the parent-plus-heavy-atom crystal, it is possible to calculate the coefficients for the vector difference synthesis. Tests indicate that this synthesis can provide a better signal-to-noise ratio than the conventional syntheses. In the Appendix it is shown that PH parent-plus-heavy-atom structure amplitude in the absence of anomalous scattering, is properly calculated as the mean of the structure amplitudes of the Friedel-related reflexions, not the root mean square.

Journal

Acta Crystallographica Section A: Crystal Physics, Diffraction, Theoretical and General CrystallographyInternational Union of Crystallography

Published: May 1, 1976

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