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References (42)
-
(2021)
First report of Cotton leaf curl Kokhran virus associated with Cotton leaf curl Multan betasatellite infecting soybean in Pakistan -
(2012)
Family-Betaflexiviridae -
M. Celli, M. Perotto, M. Merino, C. Nome, Ceferino Flores, V. Conci (2016)
First report of Cowpea mild mottle virus in chia (Salvia hispanica)Crop Protection, 89
-
C Chang (2013)
1001Plant Dis, 97
-
LG Zanardo (2017)
417Trop Plant Pathol, 42
-
J. Mokili, F. Rohwer, B. Dutilh (2012)
Metagenomics and future perspectives in virus discoveryCurrent Opinion in Virology, 2
-
MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, X Adiconis, L Fan, R Raychowdhury, Q Zeng (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genomeNat Biotechnol, 29
-
B Mukoye (2015)
1J Agri Food App Sci, 3
-
M Mahbub (2016)
234J Agric Environ Sci, 16
-
M. Brito, T. Fernández-Rodríguez, M. Garrido, A. Mejias, M. Romano, E. Marys (2012)
First Report of Cowpea Mild Mottle Carlavirus on Yardlong Bean (Vigna unguiculata subsp. sesquipedalis) in VenezuelaViruses, 4
-
RC Edgar (2010)
2460Bioinformatics, 26
-
C. Chang, L. Chien, C. Tsai, Y. Lin, Y. Cheng (2013)
First Report of Cowpea mild mottle virus in Cowpea and French Bean in Taiwan.Plant disease, 97 7
-
H Khurshid (2017)
3Biol Med, 2
-
J Rodrigues (2014)
1Virus Rev Res, 19
-
A. Mansour, A. Al-Musa, H. Vetten, D. Lesemann (1998)
Properties of a Cowpea Mild Mottle Virus (CPMMV) Isolate from Eggplant in Jordan and Evidence for Biological and Serological Differences Between CPMMV Isolates from Leguminons and Solanaceous HostsJournal of Phytopathology, 146
-
A Mansour (1998)
539J Phytopathol, 146
-
L. Zanardo, C. Carvalho (2017)
Cowpea mild mottle virus (Carlavirus, Betaflexiviridae): a reviewTropical Plant Pathology, 42
-
M Brito (2012)
3804Viruses, 4
-
JL Mokili (2012)
63Cur Opin Virol, 2
-
SH Youseif (2014)
34Euro J Soil Biol, 60
-
S. Altschul, W. Gish, W. Miller, E. Myers, D. Lipman (1990)
Basic local alignment search tool.Journal of molecular biology, 215 3
-
M. Mahbub, M. Rahman, M. Hossain, L. Nahar, B. Shirazy (2016)
Morphophysiological Variation in Soybean ( Glycine max ( L . ) Merrill ) -
N Jamil (2017)
845Plant Dis, 101
-
A King (2012)
920 -
MG Grabherr (2011)
644Nat Biotechnol, 29
-
B. Mukoye, B. Mangeni, R. Leitich, D. Wosula, D. Omayio, P. Nyamwamu, W. Arinaitwe, S. Winter, M. Abang, H. Wéré (2015)
FIRST REPORT AND BIOLOGICAL CHARACTERIZATION OF COWPEA MILD MOTTLE VIRUS (CPMMV) INFECTING GROUNDNUTS IN WESTERN KENYA -
(2014)
Characterization of a whitefly transmitted carlavirus in soybean in Puerto Rico -
G Mink (1987)
557Plant Dis, 71
-
Robert Edgar (2010)
Search and clustering orders of magnitude faster than BLASTBioinformatics, 26 19
-
S. Youseif, F. El-Megeed, A. Ageez, Z. Mohamed, A. Shamseldin, S. Saleh (2014)
Phenotypic characteristics and genetic diversity of rhizobia nodulating soybean in Egyptian soilsEuropean Journal of Soil Biology, 60
-
MJ Roossinck (2015)
767Front Microbiol, 5
-
H. Khurshid, Doulat Baig, S. Jan, Muhammad Arshad, M. Khan (2017)
Miracle crop: the present and future of soybean production in Pakistan, 2
-
MG Celli (2016)
1Crop Prot, 89
-
M. Ilyas, Javaria Qazi, S. Mansoor, R. Briddon (2010)
Genetic diversity and phylogeography of begomoviruses infecting legumes in Pakistan.The Journal of general virology, 91 Pt 8
-
M Ilyas (2010)
2091J Gen Virol, 91
-
M. Grabherr, B. Haas, M. Yassour, J. Levin, Dawn Thompson, I. Amit, X. Adiconis, Lin Fan, R. Raychowdhury, Qiandong Zeng, Zehua Chen, E. Mauceli, N. Hacohen, A. Gnirke, N. Rhind, F. Palma, B. Birren, C. Nusbaum, K. Lindblad-Toh, N. Friedman, A. Regev (2011)
Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq dataNature biotechnology, 29
-
M Riaz (2021)
1323J Plant Pathol, 103
-
N. Jamil, A. Rehman, Muhammad Hamza, A. Hafeez, H. Ismail, M. Zubair, S. Mansoor, I. Amin (2017)
First Report of Tomato leaf curl New Delhi virus, a Bipartite Begomovirus, Infecting Soybean (Glycine max)Plant Disease, 101
-
SF Altschul (1990)
403J Mol Biol, 215
-
G. Mink, C. Keswani (1987)
First report of cowpea mild mottle virus on bean and mung bean in Tanzania.Plant Disease, 71
-
M. Roossinck (2015)
Metagenomics of plant and fungal viruses reveals an abundance of persistent lifestylesFrontiers in Microbiology, 5
-
Publisher's Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations
- Publisher
- Springer Journals
- Copyright
- Copyright © The Author(s) under exclusive licence to Australasian Plant Pathology Society Inc. 2023
- ISSN
- 0815-3191
- eISSN
- 1448-6032
- DOI
- 10.1007/s13313-023-00909-9
- Publisher site
- See Article on Publisher Site
Abstract
In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the Carlavirus genus in the family Betaflexiviridae. Eight contigs of a putative member of the genus Torradovirus in the family Secoviridae were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus Begomovirus were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant.
Journal
Australasian Plant Pathology – Springer Journals
Published: May 1, 2023
Keywords: Soybean; Metatranscriptomics; Begomoviruses; Carlaviruses