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Novel EST-SSRs for an important quarantine pest Liriomyza sativae (Diptera: Agromyzidae) and their cross-species transferability

Novel EST-SSRs for an important quarantine pest Liriomyza sativae (Diptera: Agromyzidae) and... Liriomyza sativae is a globally distributed quarantine pest. We isolated polymorphic microsatellite loci from transcriptomic data for this species and tested their potential application in population genetics and cross-species transferability in other Agromyzidae species. Of the 130 microsatellite loci selected for validation, 40 were successfully amplified, and 18 were verified as polymorphic in L. sativae. The number of alleles (Na) ranged from two to ten, with polymorphism information content (PIC) values between 0.289 and 0.818. Observed (HO) and expected (HE) heterozygosity varied from 0.250 to 0.900 and 0.314 to 0.859, respectively. Low among-population differentiation was also indicated by pairwise FST (0.032–0.045). Structure analysis and principal coordinate analysis (PCoA) suggested three clusters for the 94 samples from three different locations (FZNT, SMSX, and QZYC) in Fujian Province, China. The low genetic differentiation and clear genetic structure among populations of this invasive species may result from extensive human activity. In additional, cross-species tests validated the amplification of 16, 19, 11 and 9 of 40 loci in Liriomyza huidobrensis, Liriomyza trifolii, Chromatomyia horticola and Ophiomyia phaseoli, respectively, showed the potential application of these markers for population genetic analysis in these species. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Applied Entomology and Zoology Springer Journals

Novel EST-SSRs for an important quarantine pest Liriomyza sativae (Diptera: Agromyzidae) and their cross-species transferability

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Publisher
Springer Journals
Copyright
Copyright © The Author(s) under exclusive licence to The Japanese Society of Applied Entomology and Zoology 2022
ISSN
0003-6862
eISSN
1347-605X
DOI
10.1007/s13355-022-00771-z
Publisher site
See Article on Publisher Site

Abstract

Liriomyza sativae is a globally distributed quarantine pest. We isolated polymorphic microsatellite loci from transcriptomic data for this species and tested their potential application in population genetics and cross-species transferability in other Agromyzidae species. Of the 130 microsatellite loci selected for validation, 40 were successfully amplified, and 18 were verified as polymorphic in L. sativae. The number of alleles (Na) ranged from two to ten, with polymorphism information content (PIC) values between 0.289 and 0.818. Observed (HO) and expected (HE) heterozygosity varied from 0.250 to 0.900 and 0.314 to 0.859, respectively. Low among-population differentiation was also indicated by pairwise FST (0.032–0.045). Structure analysis and principal coordinate analysis (PCoA) suggested three clusters for the 94 samples from three different locations (FZNT, SMSX, and QZYC) in Fujian Province, China. The low genetic differentiation and clear genetic structure among populations of this invasive species may result from extensive human activity. In additional, cross-species tests validated the amplification of 16, 19, 11 and 9 of 40 loci in Liriomyza huidobrensis, Liriomyza trifolii, Chromatomyia horticola and Ophiomyia phaseoli, respectively, showed the potential application of these markers for population genetic analysis in these species.

Journal

Applied Entomology and Zoology – Springer Journals

Published: May 1, 2022

Keywords: Microsatellite markers; Invasive species; Population genetics; Polymorphism; Cross-species amplification

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