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Problem Solving Handbook in Computational Biology and BioinformaticsEvolutionary Phylogenetic Networks: Models and Issues

Problem Solving Handbook in Computational Biology and Bioinformatics: Evolutionary Phylogenetic... [Phylogenetic networks are special graphs that generalize phylogenetic trees to allow for modeling of non-treelike evolutionary histories. The ability to sequence multiple genetic markers from a set of organisms and the conflicting evolutionary signals that these markers provide in many cases, have propelled research and interest in phylogenetic networks to the forefront in computational phylogenetics. Nonetheless, the term ‘phylogenetic network‘ has been generically used to refer to a class of models whose core shared property is tree generalization. Several excellent surveys of the different flavors of phylogenetic networks and methods for their reconstruction have been written recently. However, unlike these surveys, this chapte focuses specifically on one type of phylogenetic networks, namely evolutionary phylogenetic networks, which explicitly model reticulate evolutionary events. Further, this chapter focuses less on surveying existing tools, and addresses in more detail issues that are central to the accurate reconstruction of phylogenetic networks. ] http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png

Problem Solving Handbook in Computational Biology and BioinformaticsEvolutionary Phylogenetic Networks: Models and Issues

Editors: Heath, Lenwood S.; Ramakrishnan, Naren

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References (120)

Publisher
Springer US
Copyright
© Springer Science+Business Media, LLC 2011
ISBN
978-0-387-09759-6
Pages
125 –158
DOI
10.1007/978-0-387-09760-2_7
Publisher site
See Chapter on Publisher Site

Abstract

[Phylogenetic networks are special graphs that generalize phylogenetic trees to allow for modeling of non-treelike evolutionary histories. The ability to sequence multiple genetic markers from a set of organisms and the conflicting evolutionary signals that these markers provide in many cases, have propelled research and interest in phylogenetic networks to the forefront in computational phylogenetics. Nonetheless, the term ‘phylogenetic network‘ has been generically used to refer to a class of models whose core shared property is tree generalization. Several excellent surveys of the different flavors of phylogenetic networks and methods for their reconstruction have been written recently. However, unlike these surveys, this chapte focuses specifically on one type of phylogenetic networks, namely evolutionary phylogenetic networks, which explicitly model reticulate evolutionary events. Further, this chapter focuses less on surveying existing tools, and addresses in more detail issues that are central to the accurate reconstruction of phylogenetic networks. ]

Published: Oct 4, 2010

Keywords: Gene Tree; Horizontal Gene Transfer; Phylogenetic Network; Much Recent Common Ancestor; Reticulate Evolution

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