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Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of... The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png African Journal of Marine Science Taylor & Francis

Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

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Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

Abstract

The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The...
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Publisher
Taylor & Francis
Copyright
© 2016 NISC (Pty) Ltd
ISSN
1814-2338
eISSN
1814-232X
DOI
10.2989/1814232X.2016.1238410
Publisher site
See Article on Publisher Site

Abstract

The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow.

Journal

African Journal of Marine Science – Taylor & Francis

Published: Dec 2, 2016

Keywords: climatic oscillations; divergence estimates; genetic structure; geographic scale; subspecies; yellowtail

References

  • Comparative phylogeography of Atlantic bluefin tuna and swordfish: the combined effects of vicariance, secondary contact, introgression, and population expansion on the regional phylogenies of two highly migratory pelagic fishes
  • Median-joining networks for inferring intraspecific phylogenies
  • A study of the yellowtail Seriola dorsalis (Gill)
  • GENETIX, logiciel sous Window TM pour la génétique des populations
  • Differential gene flow patterns for two commercially exploited shark species, tope (Galeorhinus galeus) and common smoothhound (Mustelus mustelus) along the south-west coast of South Africa
  • Comparative analysis of genetic structure of two species of marine fish Dicentrarchus labrax and Dicentrarchus punctatus
  • Phylogeography of the trumpetfishes (Aulostomus): ring species complex on a global scale
  • The origins of tropical marine biodiversity
  • A realignment with particular reference to fish distributions
  • Rapid evolution of animal mitochondrial DNA
  • Origin, diversification, and historical biogeography of the genus Trachurus (Perciformes: Carangidae)
  • Population genetic structure and demographic history of the mudskipper Boleophthalmus pectinirostris on the northwestern Pacific coast
  • Bipolar molluscs and their evolutionary implications
  • Global phylogeography of the dolphinfish (Coryphaena hippurus): the influence of large effective population size and recent dispersal on the divergence of a marine pelagic cosmopolitan species
  • After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean
  • Import risk assessment: juvenile yellowtail kingfish (Seriola lalandi) from Spencer Gulf aquaculture, South Australia
  • Trans-Arctic dispersals and the evolution of a circumpolar marine fish species complex, the capelin Mallotus villosus
  • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
  • No divergent evolution, despite restricted connectivity, between Atlantic and Indian Ocean goby populations
  • Bayesian phylogenetics with BEAUti and the BEAST 1.7
  • Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation
  • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
  • Arlequin (version 3.0): an integrated software package for population genetics data analysis
  • Phylogeography of the reef fish Cephalopholus argus (Epinephelidae) indicates Pleistocene isolation across the Indo-Pacific Barrier with contemporary overlap in the Coral Triangle
  • Evidence of connectivity between juvenile and adult habitats for mobile marine faunas: an important component of nurseries
  • FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) (updated from Goudet, J. 1995. FSTAT (version 1.2): a computer program to calculate F-statistics)
  • Inter-ocean dispersal is an important mechanism in the zoogeography of hakes (Pisces: Merluccius spp.)
  • Bayesian analysis of allozyme markers indicates a single genetic population of kingklip Genypterus capensis off South Africa
  • Stock structure of the world’s istiophorid billfishes: a genetic perspective
  • Marine biodiversity in South Africa: an evaluation of current states of knowledge
  • Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
  • Population connectivity and phylogeography of a coastal fish, Atractoscion aequidens (Sciaenidae), across the Benguela Current Region: evidence of an ancient vicariant event
  • The genetic legacy of the Quaternary ice ages
  • Genetic consequences of climatic oscillations in the Quaternary
  • Spawning on the edge: spawning grounds and nursery areas around the southern African coastline
  • On the structure and origin of major glaciation cycles 1. Linear responses to Milankovitch forcing
  • CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
  • A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene
  • Adegenet: a R package for the multivariate analysis of genetic markers
  • Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
  • Yellowtail, Seriola lalandi
  • Spatial characterisation of the Benguela ecosystem for ecosystem-based management
  • Intraspecific genetic variation in the percoid teleosts, Argyrosomus japonicus (Temminck and Schlegel, 1843) and Pomadasys commersonnii (Lacepede, 1801), as inferred from the mitochondrial control region
  • The great American schism: divergence of marine organisms after the rise of the Central American Isthmus
  • Crossing the impassable: genetic connections in 20 reef fishes across the eastern Pacific barrier
  • Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck and Schlegel, 1845)
  • Phylogeography and historical demography of the Pacific Sierra mackerel (Scomberomorus sierra) in the Eastern Pacific
  • When two oceans meet: regional population genetics of an exploited coastal shark, Mustelus mustelus
  • A tale of three tails: cryptic speciation in a globally distributed marine fish of the genus Seriola
  • Genetic architecture of the marbled goby Pomatoschistus marmoratus (Perciformes, Gobiidae) in the Mediterranean Sea
  • A study on Pomatoschistus tortonesei Miller 1968 (Perciformes, Gobiidae) reveals the Siculo-Tunisian Strait (STS) as a breakpoint to gene flow in the Mediterranean basin
  • Genetic analyses reveal declining trends and low effective population size in an overfished South African sciaenid species, the dusky kob (Argyrosomus japonicus)
  • Genetic analyses of overfished silver kob Argyrosomus inodorus (Sciaenidae) stocks along the southern African coast
  • Unravelling population structure of black musselcracker Cymatoceps nasutus: evidence for multiple populations in South African coastal waters
  • Genetic divergence of kingfish from Japan, Australia and New Zealand inferred by microsatellite DNA and mitochondrial DNA control region markers
  • Genetic variation within the Cape Stumpnose, Rhabdosargus holubi Steindachner (Teleostei: Sparidae)
  • Tagging News 25. [Tagging newsletter of the Oceanographic Research Institute, Durban.]
  • MICROSATELIGHT – pipeline to expedite microsatellite analysis
  • Modeltest: testing the model of DNA substitution
  • Resolution of the taxonomic status of Chilean and Californian jack mackerels using mitochondrial DNA sequence
  • Inference of population structure using multilocus genotype data
  • Developing a genetic baseline for the yellowtail amberjack species complex, Seriola lalandi sensu lato, to assess and preserve variation in wild populations of these globally important aquaculture species
  • Tracer v1.4.1
  • Molecular phylogenetics of moray eels (Muraenidae) demonstrates multiple origins of a shell-crushing jaw (Gymnomuraena, Echidna) and multiple colonizations of the Atlantic Ocean
  • Ecological speciation in tropical reef fishes
  • DISTRUCT: a program for the graphical display of population structure
  • Genepop’007: a complete re-implementation of the genepop software for Windows and Linux
  • Tertiary marine paleotemperatures
  • A decade of seascape genetics: contributions to basic and applied marine connectivity
  • Genetic variation and dispersal of the yellowtail kingfish, Seriola lalandi, from New South Wales waters
  • Carangidae
  • Carangidae
  • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
  • A review of marine phylogeography in southern Africa
  • Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data
  • Inter-oceanic genetic differentiation among albacore (Thunnus alalunga) populations
  • Species-specific genetic markers for identification of early life history stages of Cape hakes, Merluccius capensis and M. paradoxus, in the southern Benguela Current
  • Community genetics in the Northwestern Atlantic intertidal
  • Genetic isolation by distance reveals restricted dispersal across a range of life-histories: implications for biodiversity conservation planning across highly variable marine environments