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A New Route for Dioxygen Activation Uncovered from Quantum Mechanics Investigations of X‐Ray‐Diffraction‐Captured Intermediates of the Ferroxidase Reaction of Ferritins from Gram‐Negative Bacteria

A New Route for Dioxygen Activation Uncovered from Quantum Mechanics Investigations of... Following the recent reassessment from X‐ray‐diffraction‐caught short‐path uptake to wide permeation of the S20A mutant Escherichia coli ferritin by ferrous ions, what happens when dioxygen gets to the diiron system is investigated. It is shown that the previously X‐ray‐caught situation of an unbound‐dioxygen diferrous state actually is an ephemeral state that changes into a P‐type peroxodiferric state, while a water molecule moves to bridge the two ferric ions, in what appears to be a remarkable redox process. All this stems from density functional theory (DFT)‐based quantum mechanics‐molecular mechanics and broken symmetry (BS) calculations that are extended to X‐ray‐diffraction‐caught oxodiferric and I‐type peroxodiferric systems from other subunits of the same crystal structure, validating them while determining antiferromagnetic coupling with all such diiron systems except the oxodiferric one. The latter converged, on BS, to ferromagnetic coupling under a wide variety of hybrid DFT functionals and basis sets. The trend of the Heisenberg J coupling reflects and substantiates the structures of the diiron core. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Advanced Theory and Simulations Wiley

A New Route for Dioxygen Activation Uncovered from Quantum Mechanics Investigations of X‐Ray‐Diffraction‐Captured Intermediates of the Ferroxidase Reaction of Ferritins from Gram‐Negative Bacteria

Pietra, Francesco
Advanced Theory and Simulations , Volume 3 (4) – Apr 1, 2020
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Publisher
Wiley
Copyright
© 2020 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim
eISSN
2513-0390
DOI
10.1002/adts.201900253
Publisher site
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Abstract

Following the recent reassessment from X‐ray‐diffraction‐caught short‐path uptake to wide permeation of the S20A mutant Escherichia coli ferritin by ferrous ions, what happens when dioxygen gets to the diiron system is investigated. It is shown that the previously X‐ray‐caught situation of an unbound‐dioxygen diferrous state actually is an ephemeral state that changes into a P‐type peroxodiferric state, while a water molecule moves to bridge the two ferric ions, in what appears to be a remarkable redox process. All this stems from density functional theory (DFT)‐based quantum mechanics‐molecular mechanics and broken symmetry (BS) calculations that are extended to X‐ray‐diffraction‐caught oxodiferric and I‐type peroxodiferric systems from other subunits of the same crystal structure, validating them while determining antiferromagnetic coupling with all such diiron systems except the oxodiferric one. The latter converged, on BS, to ferromagnetic coupling under a wide variety of hybrid DFT functionals and basis sets. The trend of the Heisenberg J coupling reflects and substantiates the structures of the diiron core.

Journal

Advanced Theory and Simulations – Wiley

Published: Apr 1, 2020

Keywords: ; ; ; ;

References